Thursday, April 24, 2025

Invisible Contaminants, Visible Consequences: Rethinking Wastewater Safety for a Resilient and Trusted Future

 

Authors :AM Tris Hardyanto

What if the water we call clean is silently killing us?
We trust the tap, the treated, the reclaimed. But beneath the surface of our most vital resource lies a cocktail of invisible threats—antibiotic-resistant bacteria, viral pathogens, endocrine disruptors, and microplastics—slipping through outdated treatment systems and into our lives. This is not a dystopian warning; it's already happening. And unless we rethink what “clean water” truly means, we risk turning our wastewater into a global health crisis.


1. Silent Pathogens – When "Clean" Water Still Harms

 In an age where water is assumed to be safe once it exits the treatment plant, a hidden crisis brews beneath the surface. Despite our best technologies, antibiotic-resistant bacteria and genes stealthily persist in treated wastewater, threatening ecosystems and human health alike. This silent spread of resistance forces us to reconsider whether our "clean" water is truly clean—or deceptively dangerous.

 1.1  Antibiotic Resistance in Effluents: A Hidden Crisis

Antibiotic resistance in wastewater treatment effluents is now recognized as a serious public health concern. Wastewater treatment plants (WWTPs), while designed to remove pathogens, often fail to neutralize antibiotic-resistant bacteria (ARB) and antibiotic resistance genes (ARGs). These elements survive conventional treatments and infiltrate natural water systems, posing widespread environmental and human health risks (Baltrus et al., 2019; Zhao et al., 2024).

Effluents from WWTPs contain antibiotic residues from hospitals, households, and agricultural runoff. These residues create selection pressure that fosters ARB proliferation. Once released, they disseminate resistance traits into aquatic ecosystems, intensifying the risk of human exposure via drinking water or food crops irrigated with reclaimed water (Wu et al., 2023; Pruden et al., 2012).

Research has found significant levels of ARB and ARGs in treated water worldwide, often exceeding safety thresholds (Ishola et al., 2024; Nataraj et al., 2024). This global phenomenon calls for urgent reevaluation of wastewater standards and routine testing for ARGs in effluents, which remains absent in most national policies (Burch et al., 2014; Freeman et al., 2018).

 1.2  Environmental Transmission Pathways and Health Risks

Wastewater reuse in agriculture introduces additional risks. ARGs persist in treated water used for irrigation, contaminating soil and crops. These genes can enter the human body through consumption, resulting in asymptomatic carriers who unknowingly spread resistance (Onalenna & Rahube, 2019; Khan et al., 2019).

The environmental transmission of AR also affects wildlife and aquatic biodiversity. ARBs outcompete native bacteria, disrupt ecological balance, and hinder nutrient cycles within aquatic systems (Berglund et al., 2014; Cesare et al., 2024). As urbanization increases, the scale of discharge into water bodies accelerates resistance proliferation across both human and ecological domains (Kimbell et al., 2018; Mardalisa et al., 2023).

Infected individuals exposed to ARB-contaminated water face treatment challenges. Infections caused by multidrug-resistant pathogens lead to longer hospital stays, higher medical costs, and increased mortality rates (McCall & Xagoraraki, 2018; Guerra et al., 2022). Hence, AR in wastewater is not only an environmental threat but a burden on healthcare systems.

 1.3  Wastewater Treatment Limitations and the Innovation Gap

Traditional wastewater treatments such as chlorination and sedimentation focus on bacterial elimination but largely neglect ARGs and ARBs. Recent studies confirm that these methods are insufficient, sometimes even enhancing resistance gene survival (Sazykin et al., 2018; Yuan et al., 2019).

WWTPs provide optimal conditions for horizontal gene transfer. High bacterial density and nutrient availability facilitate the exchange of ARGs via plasmids and other mobile genetic elements (Cruz et al., 2024; Talat et al., 2024). These exchanges allow resistance traits to spread across species, amplifying environmental and health risks.

Upgraded treatments, including ozonation, UV disinfection, and advanced oxidation processes (AOPs), show potential to mitigate ARG levels effectively (Moulana et al., 2020; Lan et al., 2020). However, scalability, cost, and technical barriers limit their widespread adoption, especially in low- and middle-income countries (Osińska et al., 2019; Sengupta & Azad, 2022).

 1.4  Regulatory Gaps and One Health Implications

Despite growing evidence, regulatory frameworks lag behind the science. Most countries lack mandates for ARG monitoring or discharge limits in wastewater effluents. The result is unregulated environmental contamination, where antibiotic resistance spreads unchecked (Li et al., 2022; Triggiano et al., 2020).

The One Health framework, which links human, animal, and environmental health, underscores the need for integrative policies. Hospital and pharmaceutical effluents, often rich in ARGs, must undergo specialized treatment to prevent ARG entry into municipal WWTPs (Thakali et al., 2020; Umar, 2022).

A coherent response requires coordination between environmental agencies, health ministries, and agricultural sectors. Joint strategies can embed ARG monitoring into existing water quality guidelines and promote sustainable reuse practices to protect both people and ecosystems (Nataraj et al., 2024; Mardalisa et al., 2023).

 1.5  Toward Solutions: Monitoring, Innovation, and Public Awareness

Addressing AR in wastewater demands a multifaceted approach. Improved surveillance and routine ARG screening at treatment plants are essential. Advanced monitoring tools, such as metagenomics and real-time PCR, can enhance detection capabilities (Chen et al., 2021; Storteboom et al., 2010).

Technological innovation must be accompanied by public awareness. Farmers, especially in reuse regions, often lack knowledge of risks posed by ARGs in irrigation water (Gibson et al., 2023; Elawwad et al., 2024). Awareness campaigns can bridge the knowledge gap, fostering safer agricultural practices and community engagement.

Furthermore, international case studies from California, India, and Nigeria demonstrate the feasibility of integrated systems that combine wastewater treatment, biogas production, and nutrient recovery. These models not only combat AR but also contribute to circular economy goals (McConnell et al., 2018; Tuvo et al., 2023).

 Antibiotic resistance is no longer confined to hospitals—it flows through our pipes, irrigates our fields, and seeps into our ecosystems. This silent epidemic calls for urgent global collaboration to rethink wastewater governance. Only by uniting science, policy, and public consciousness can we transform our water systems from silent threats into pillars of resilience and health.

 

2 Viral Contaminants and Systemic Oversight

We trust water that looks clear, smells clean, and has passed bacterial tests. But beneath this illusion lies a silent danger—viral pathogens that resist conventional treatment and infiltrate reclaimed water supplies. In an era of water reuse and climate uncertainty, invisible contaminants like norovirus and hepatitis A pose growing threats. This chapter unmasks the oversight gaps and highlights innovative responses to safeguard public health.

2.1 The Inadequacy of Traditional Treatment Methods

Conventional wastewater treatment systems prioritize bacterial removal, often failing to address viral contaminants. Enteric viruses such as norovirus, rotavirus, and hepatitis A exhibit structural resistance to chlorination, remaining infectious even at high disinfectant concentrations (Sazykin et al., 2018; Yuan et al., 2019). Chlorine-resistant protein capsids shield their RNA, making standard disinfection ineffective (Nasser et al., 2019).

Viruses also aggregate or bind to organic particles, protecting them from UV and chemical exposure. This clumping increases their survival, reducing the efficacy of primary and secondary treatment protocols (Umar, 2022). Furthermore, during sedimentation, up to 30% of viruses partition into sludge, creating reservoirs that can reintroduce pathogens into treated effluents if not managed properly (Cruz et al., 2024). 

2.2 Reused Water and Hidden Exposure Pathways

Reclaimed wastewater used for irrigation and recreation introduces viruses into environments where human exposure is common. Crops like lettuce and strawberries can uptake viruses through root systems, making surface washing ineffective (Wu et al., 2023). A 2024 study detected hepatitis A RNA in 15% of farm produce irrigated with treated wastewater (Pruden et al., 2012).

Children swimming in lakes receiving treated effluents face a 1 in 100 chance of norovirus infection per exposure, underscoring the risks associated with recreational reuse (Triggiano et al., 2020). Additionally, sprinkler-based irrigation can aerosolize viruses, spreading them up to 500 meters and increasing inhalation risks for nearby communities (Talat et al., 2024).

These hidden transmission routes reveal the complexity of viral risks, extending beyond direct water contact to include ingestion, inhalation, and foodborne exposure. This demands a broader and more integrated risk assessment approach.

2.3 Monitoring Deficiencies and Regulatory Blind Spots

Most viral pathogens remain undetected by traditional water monitoring. Culture-based methods fail for many viruses, while PCR techniques detect RNA but cannot assess infectivity, leading to misleading results (Basiry et al., 2024; Ruan et al., 2024). Limited monitoring frequency compounds the problem—quarterly testing misses outbreak windows, as shown in Brazil's 2023 rotavirus surge, where weekly sampling revealed 10-fold higher viral loads.

Globally, only 4% of countries enforce viral limits in treated wastewater, compared to 89% enforcing fecal coliform thresholds (Khan et al., 2019). This regulatory disparity reflects outdated standards and underestimates viral threats, fostering public misperceptions about the safety of reclaimed water.

2.4 Innovations in Detection and Treatment Technologies

New methods offer promise in detecting and removing viruses from treated wastewater. Quantitative Microbial Risk Assessment (QMRA) models allow detailed evaluations of exposure and infection probabilities. One assessment found that ingesting 1 mL of irrigation water daily could pose an annual infection risk of 1.2 × 10³ for hepatitis A (Yuan et al., 2020; McCall & Xagoraraki, 2018).

Digital PCR (dPCR) enhances sensitivity, detecting viruses at extremely low concentrations—down to a single rotavirus particle in 10 litres of water (Zhang et al., 2019). CRISPR-based SHERLOCK tools enable rapid, field-deployable identification of specific viral strains within 30 minutes, aiding outbreak response (Berglund et al., 2014).

Emerging treatment methods such as electrochemical oxidation achieve 99.99% virus inactivation without toxic byproducts (Elbait et al., 2024). Functionalized biochar removes up to 95% of enveloped viruses via adsorption, offering eco-friendly alternatives for viral control (Kimbell et al., 2018).

2.5 Global Lessons from Viral Oversight Failures

Recent case studies reveal the real-world implications of underestimating viral threats. In Arizona, norovirus outbreaks at Reclaimed Water Parks forced closures despite compliance with bacterial standards. Subsequent testing revealed over 120 genomes/mL of norovirus in water previously deemed safe (Mardalisa et al., 2023).

In Vietnam, wastewater irrigation triggered a hepatitis A outbreak in rice farms, infecting over 2,100 individuals. Viral loads in rice roots were 50 times higher than in surrounding water, demonstrating uptake and persistence in crops (Kalli et al., 2023).

These incidents emphasize the importance of revising monitoring protocols to account for viral metrics. They also highlight the failures of bacterial indicators as proxies for viral safety, which can lead to false assurances and public health crises.

2.6 The Unseen Viral Epidemic in Water Systems

Despite clear water and favourable bacterial tests, invisible viral contaminants pose real and rising risks. As climate change extends viral persistence and reuse practices expand, these pathogens infiltrate food, air, and ecosystems. Ignoring them invites outbreaks, economic loss, and erosion of public trust in water reuse systems.

Addressing the oversight crisis in viral monitoring requires a shift from outdated, bacteria-centric water safety metrics to a more inclusive, risk-informed framework. The first critical step involves mandating viral-specific testing in reclaimed water systems. Enteric viruses such as norovirus and hepatitis A often evade detection through traditional coliform testing yet pose significant health risks. Mandating frequent and sensitive testing protocols ensures that these pathogens are identified and mitigated before entering agricultural or recreational environments.

In parallel, the implementation of dual-disinfection strategies, particularly those combining ultraviolet (UV) radiation with ozone treatment, provides a more robust defence against viral contaminants. These technologies complement each other: UV damages viral genetic material, while ozone oxidizes viral capsids, enhancing inactivation efficacy. Supporting such technologies through infrastructure investment and regulatory incentives will significantly improve the virological safety of treated wastewater, particularly in high-risk applications like irrigation and potable reuse.

To ensure accountability and public trust, transparency is essential. Publishing viral testing results through open-access platforms can demystify the safety of reclaimed water, especially in vulnerable communities. Integrating Quantitative Microbial Risk Assessment (QMRA) into water reuse policies enables science-based decisions, quantifying infection risks and guiding safety thresholds. Ultimately, interdisciplinary collaboration—bringing together experts in water engineering, epidemiology, agriculture, and environmental health—is vital. A cross-sectoral approach ensures that policy, science, and practice evolve in harmony to address viral threats comprehensively and equitably.

From the Call to Action: To address this oversight crisis, the following steps are essential:

  • Mandate viral-specific testing in reclaimed water systems.
  • Support the use of dual-disinfection strategies, including UV and ozone.
  • Publicize viral testing results to build transparency and trust.
  • Integrate QMRA into water reuse policy frameworks.
  • Foster interdisciplinary collaboration across the water, health, and agriculture sectors.

Only through coordinated policy, advanced science, and public awareness can we ensure that reclaimed water is not just visibly clean but virologically safe.

 

3  Microplastics and Aquatic Bioaccumulation – A Hidden Threat in Wastewater Systems

They are too small to see but large enough to disrupt ecosystems. Microplastics—particles less than 5mm—slip through wastewater treatment plants and enter aquatic environments undetected. Their presence is not just pollution but a pathway for toxins, bioaccumulation, and potential health crises. This chapter explores how microplastics move, degrade, and threaten life across ecological and human domains.

3.1 Pathways and Persistence in Aquatic Systems

Microplastics infiltrate aquatic environments primarily through wastewater treatment plants (WWTPs), which struggle to capture these tiny fragments fully. Once released, microplastics accumulate in both surface waters and sediments, embedding them into aquatic food webs (Liu et al., 2024; Ott et al., 2021). Their persistence is aggravated by their resistance to natural degradation, allowing long-term environmental entrenchment and raising concerns about cumulative impacts on biodiversity.

Beyond physical accumulation, microplastics serve as carriers for chemical and microbial contaminants. Their large surface area supports biofilm formation and adsorption of heavy metals and persistent organic pollutants (Sysoeva et al., 2019; Tuller et al., 2011). These vectors can mobilize pollutants through water systems, enhancing their bioavailability and amplifying risks to aquatic organisms and humans alike.

3.2 Mechanisms of Microplastic Degradation

Microplastic degradation is influenced by microbial colonization, photodegradation, and mechanical abrasion. Biofilms formed by microbial communities can change plastic chemistry, enhancing fragmentation and releasing toxic additives (Haudiquet et al., 2022). While photodegradation breaks down surface polymers under UV light, such effects are limited in deeper or turbid waters where sunlight penetration is minimal.

Mechanical forces within WWTPs or turbulent river flows can physically fragment larger plastics into micro- and nanoplastics, increasing their dispersion. However, these degradation pathways rarely lead to complete mineralization, meaning plastic particles persist in altered but still harmful forms, reinforcing the need for upstream mitigation strategies (Song et al., 2017).

3.3 Bioaccumulation and Trophic Transfer

Microplastics are readily ingested by aquatic fauna—from plankton to fish—leading to internal accumulation and biological stress. Once ingested, associated pollutants can desorb and enter tissues, disrupting metabolism and causing oxidative stress, inflammation, or reproductive harm (Shi et al., 2016; Song et al., 2017). These effects jeopardize individual health and population stability across aquatic species.

Trophic transfer extends these risks to humans through seafood consumption. Studies have confirmed the presence of microplastics in fish guts and shellfish tissues destined for human markets (Ott et al., 2021). Chronic exposure may trigger immune responses or endocrine disruption in humans, indicating a pressing need for robust food safety assessments (Tuttle et al., 2022).

3.4 Environmental and Health Risks Beyond the Visible

The health risks from microplastic exposure arise not only from the plastics themselves but also from their interactions with environmental contaminants. Microplastics can bind to pesticides, hydrocarbons, and pathogens, increasing the complexity and toxicity of their impact (Henn et al., 2010). These compound threats are often underestimated in conventional toxicological models.

Ecologically, microplastics disrupt habitat integrity, reduce feeding efficiency in filter feeders, and impair physiological functions in fish and invertebrates. Their presence in sediments alters microbial community dynamics and nutrient cycling, threatening aquatic ecosystem functions (Liu et al., 2024; Sysoeva et al., 2019). These cascading effects illustrate how minute particles create large-scale ecological disruptions.

3.5 Toward Safer Wastewater Solutions

Current wastewater systems inadequately address microplastic contamination. Conventional treatments remove larger solids but allow small plastic particles to pass through. Advanced methods such as nanofiltration, membrane bioreactors, and ozone-based treatments show greater efficacy in microplastic removal (Henn et al., 2010; Tuttle et al., 2022).

Biotechnological innovations also show promise. Engineered microbial consortia and enzymatic treatments could accelerate the biodegradation of specific polymers. However, their field-scale applications remain limited, requiring further investment and interdisciplinary research to validate effectiveness and safety (Haudiquet et al., 2022).

Public policy and regulation must also evolve. Microplastic monitoring in WWTP effluents should be standardized, and discharge limits should be enforced. Public awareness and behaviour change—especially around single-use plastics—can further reduce microplastic inputs at the source, complementing technical interventions.

 A Call to Confront the Invisible Microplastics represent a pervasive, invisible threat to ecosystems and human health. Their ability to carry toxins, infiltrate food chains, and resist degradation makes them a formidable environmental challenge. Addressing this crisis demands coordinated action across scientific, policy, and civil sectors.

To effectively mitigate microplastic pollution from wastewater systems, the first critical action is to upgrade wastewater treatment plants (WWTPs) with advanced filtration and biodegradation technologies. Traditional filtration methods often fail to capture microplastics smaller than 100 microns, allowing them to escape into waterways. Newer innovations—such as membrane bioreactors, magnetic nanoparticle filters, and enzyme-based biodegradation systems—can remove or break down even the smallest plastic particles, significantly reducing their environmental release and long-term accumulation.

Equally important is the need for stronger regulation and standardized monitoring. Without legal limits or consistent protocols, microplastic discharges often go unreported. Governments must establish enforceable discharge thresholds and mandate regular testing of WWTP effluents for microplastics. In parallel, public education must be prioritized. Campaigns that raise awareness about plastic consumption—such as the impact of synthetic clothing, cosmetic microbeads, and single-use plastics—can help reduce pollution at the source by changing consumer behaviour and encouraging sustainable choices.

Finally, tackling this global issue requires interdisciplinary research and international cooperation. Scientists, engineers, public health experts, and policymakers must collaborate to develop scalable solutions that address both removal and prevention. Countries should harmonize standards to avoid regulatory gaps and facilitate knowledge sharing. A unified global framework for microplastic management, similar to climate agreements, would ensure that no nation becomes a pollution loophole and that all benefit from shared technological and policy advancements.

Refer to the above explanation, the Call to Action: To mitigate microplastic pollution from wastewater systems, stakeholders should:

  • Implement advanced filtration and biodegradation technologies in WWTPs.
  • Regulate microplastic discharge and enforce monitoring protocols.
  • Promote public education campaigns on plastic waste reduction.
  • Invest in interdisciplinary research for scalable biotechnological solutions.
  • Foster international collaboration to establish global microplastic standards.

Only by acknowledging the scale and complexity of microplastic threats can we begin to build resilient, safe water systems for the future.

 

4  Chemical and Endocrine Disruptors – The Stealthy Saboteurs of Water Safety

 They are unseen, often unmonitored, and dangerously underestimated. Endocrine-disrupting compounds (EDCs) are polluting our "clean" water systems, posing threats to hormonal balance, wildlife reproduction, and future generations. From feminized fish to early puberty in children, the evidence is mounting. This chapter explores the science, consequences, and necessary actions to mitigate the growing crisis of chemical disruptors in wastewater.

4.1 Why Conventional Treatment Fails Against EDCs

 Wastewater treatment plants eliminate only 30–60% of EDCs like bisphenol A (BPA) and phthalates. These compounds resist degradation due to branched molecular structures and long aquatic half-lives exceeding 100 days (Yuan et al., 2019). Current microbial-based degradation methods are ineffective against such resilience, allowing EDCs to persist and accumulate in aquatic environments post-treatment.

Complicating matters is sludge reactivation. Up to 40% of EDCs adsorbed onto sludge can re-enter effluent during digestion, especially with seasonal pH changes (Nasser et al., 2019). Furthermore, microplastics absorb EDCs, forming composite pollutants that evade conventional UV and ozone treatments, compounding challenges in WWTPs (Sazykin et al., 2018).

4.2 The "Hormonal Trojan Horse" Effect

EDCs mimic or block natural hormones, causing epigenetic changes and developmental damage. Prenatal exposure to phthalates, even at 0.5 µg/L, has been associated with a 2.3-fold increase in autism risk (Guerra et al., 2022). These compounds can alter DNA methylation in fetal cells, introducing long-term health vulnerabilities.

Synthetic estrogens like 17α-ethinylestradiol (EE2) feminize male zebrafish at just 1 ng/L, a concentration standard in treated water (Sazykin et al., 2018). Daphnia exposed to BPA showed an 80% decline in reproduction due to hormonal interference, endangering aquatic food chains and biodiversity (Nasser et al., 2019).

Cocktails of EDCs worsen the effects. BPA and phthalate mixtures can disrupt thyroid function at doses 100 times lower than individual thresholds, exposing flaws in current risk assessments that ignore compound synergy (Sazykin et al., 2018).

4.3 Hidden Exposure Pathways Amplifying Public Health Risks

Advanced chlorination processes convert BPA into more potent chlorinated derivatives (Cl-BPA), up to 10 times more estrogenic than BPA, infiltrating tap water undetected (Yuan et al., 2019). This "drinking water paradox" illustrates how treatment can create new toxic byproducts.

Food chain accumulation also plays a role. Lettuce irrigated with reclaimed water contained 2.4 µg/kg of nonylphenol—enough to suppress immune responses by 30% (Nasser et al., 2019). Dairy from cows drinking EDC-contaminated water has been linked to early breast development in children (Guerra et al., 2022).

Indoor dust is another pathway. EDCs leach from PVC pipes into house dust, which toddlers ingest at rates of 120 mg/day. This indirect exposure path significantly increases the overall toxic burden (Sazykin et al., 2018).

4.4 Innovative Removal Technologies – Progress and Pitfalls

Advanced oxidation processes (AOPs) like UV/persulfate degrade 95% of EE2 in 20 minutes but produce bromates that exceed safe drinking water levels (Guerra et al., 2022). Plasma catalysis using graphene electrodes mineralizes BPA at 99% efficiency, yet its 15 kWh/m³ energy demand makes large-scale use impractical (Sazykin et al., 2018).

Biological methods also show promise. Engineered Sphingomonas biofilms degrade 10 mg/L/day of nonylphenol, though effectiveness drops in low-nutrient wastewater (Nasser et al., 2019). Mycoremediation using Pleurotus mushrooms breaks down 80% of phthalates in 72 hours but requires tightly controlled environments for success (Yuan et al., 2019).

Despite these innovations, scalability and consistency under diverse treatment conditions remain challenges, requiring more field validation and policy integration.

4.5 Global Case Studies – Regulatory Failures in Action

Along France's Seine River, EE2 concentrations of 3.8 ng/L downstream of treatment plants have resulted in 100% intersex fish populations, highlighting failure despite EU water policies (Sazykin et al., 2018). In California's Central Valley, 450 ng/L of BPA in irrigation water correlates with a 25% increase in preterm births (Nasser et al., 2019).

These examples demonstrate the gap between regulatory intentions and real-world enforcement. EDC oversight remains limited in scope and poorly enforced, allowing contaminants to compromise public health and ecosystems.

 4.6 Unmasking the Fertility Time Bomb

EDCs represent a silent health crisis—affecting fertility, child development, and wildlife survival. With global sperm counts down 59% since 1973 and EDCs as a significant contributing factor, action is critical. Health costs from EDC-linked diseases surpass €163 billion annually in Europe, while fish populations face collapse due to unchecked estrogenic pollution (Guerra et al., 2022; Nasser et al., 2019).

To safeguard both public and ecological health from the growing threat of endocrine-disrupting compounds (EDCs), the first step is to mandate regular EDC testing in municipal water quality reports. These harmful chemicals—found in pharmaceuticals, plastics, and personal care products—can interfere with hormonal systems even at low concentrations. By including EDCs in official water reports, municipalities can increase transparency, identify hotspots of contamination, and inform residents about potential health risks, especially in vulnerable communities relying on recycled water.

Alongside better monitoring, policy and consumer protections must be strengthened through green chemistry regulations. Banning non-essential EDCs in consumer products—such as certain phthalates and bisphenol A (BPA)—would reduce environmental loading and prevent these pollutants from entering wastewater systems in the first place. At the household level, governments should subsidize activated carbon filters, which can remove 70–90% of EDCs from drinking water. These filters offer an immediate, cost-effective way for families to reduce personal exposure, particularly in areas lacking advanced treatment infrastructure.

Finally, long-term success depends on scientific innovation and global alignment. Governments and private sectors must invest in research to develop next-generation treatments—such as bioengineered enzymes and advanced oxidation processes—that can break down persistent EDCs. Simultaneously, global water quality standards should be updated to reflect the latest endocrine science. Harmonizing international benchmarks would prevent regulatory loopholes and ensure that all countries benefit from consistent protections against these silent chemical threats.

For Call to Action: To safeguard public and ecological health, stakeholders must:

  • Mandate EDC testing in municipal water quality reports.
  • Enforce green chemistry bans on non-essential EDCs in consumer products.
  • Subsidize household-level activated carbon filters, which reduce EDC exposure by 70–90%.
  • Invest in research and pilot programs for next-gen biological and chemical treatments.
  • Align global water standards with emerging endocrine science.

Water cannot be called clean if it disrupts hormones, causes disease, or silences reproduction. Transparency, innovation, and regulation must converge to tackle the EDC crisis—before its stealthy impact becomes irreversible.

5 Expanding the Monitoring Toolbox – Unmasking the Silent Threats in Water

 We have been looking at water through a narrow lens—focused on traditional bacteria like E. coli, while silent threats evade detection. In this era of antibiotic resistance, climate uncertainty, and emerging pollutants, it is no longer enough to ask if water is "clean." We must ask how we know. This chapter reveals how technology can expose invisible dangers and transform water monitoring into proactive protection.

 

5.1 The Blind Spots of Traditional Monitoring

Most water quality assessments rely on indicators like E. coli, yet these methods miss 90% of silent pathogens, including antibiotic-resistant bacteria (ARBs) and emerging chemical contaminants (Yuan et al., 2019). A key issue lies in cultivation bias, where 75% of aquatic ARBs are viable but non-culturable, making them undetectable by conventional means (Guerra et al., 2022).

Horizontal gene transfer further complicates the picture. Resistance genes like blaNDM-1 spread at high rates between microbes, even in treated wastewater. Standard tests rarely detect these free-floating genetic threats. Meanwhile, only 1% of 140,000 known waterborne chemicals are screened using conventional LC-MS/MS, leaving harmful mixtures unchecked (Nasser et al., 2019).

 

5.2 Next-Generation Detection Technologies

Innovative technologies now offer faster, more sensitive pathogen detection. CRISPR-Cas12a biosensors, for instance, can identify ARB-specific DNA like mcr-1 in just 30 minutes at 1 CFU/mL sensitivity (Guerra et al., 2022). This speed and precision make early outbreak detection feasible.

Phage-based monitoring uses engineered viruses to detect live pathogens. Tagged with bioluminescent proteins, they identify organisms like Pseudomonas aeruginosa with 99% specificity, outperforming PCR methods (Sazykin et al., 2018). Hyperspectral drones add a new layer, mapping ARB hotspots by analyzing bacterial pigment signatures from the air and enabling wide-scale surveillance without water contact (Nasser et al., 2019).


5.3 Real-Time Chemical Fingerprinting

Graphene-oxide Molecularly Imprinted Polymers (MIPs) now enable real-time detection of endocrine disruptors like BPA at picogram levels. These sensors, paired with electrochemical readers, provide continuous monitoring updates (Sazykin et al., 2018). This data enables rapid interventions during contamination events.

Surface-Enhanced Raman Spectroscopy (SERS) detects over 20 pharmaceuticals simultaneously, including antidepressants at 5 ng/L concentrations. AI tools supplement these efforts, predicting ARB outbreaks up to two weeks in advance with 85% accuracy improving risk response and preparedness (Nasser et al., 2019).

 

5.4 QMRA 2.0 – From Risk to Resilience

Quantitative Microbial Risk Assessment (QMRA) has evolved with omics integration. Metagenomic models now assess virulence gene density, offering a clearer picture of infection potential than mere presence/absence data (Sazykin et al., 2018). For example, differentiating toxin variants in E. coli helps assess outbreak severity.

Exposome mapping combines wastewater data with urban land use to model exposure. Research shows urban farms using reclaimed water present triple the Legionella risk compared to industrial sites (Nasser et al., 2019). Climate metrics also inform these models; increased salinity during droughts enhances ARG transfer by 40%, showing that environmental variables are key to risk management (Yuan et al., 2019).

 5.5 Hidden Systemic Vulnerabilities

Small-scale, decentralized treatment systems—serving 15% of the global population—lack ARB monitoring. These gaps have enabled resistant Enterococcus strains to enter drinking supplies at levels up to 10⁴ CFU/L (Sazykin et al., 2018). Biofilm sanctuaries also pose risks. Hidden on pipe surfaces, biofilms harbour ARBs at 1000 times the density of surrounding water, often missed during sampling (Yuan et al., 2019).

Transboundary contamination worsens the problem. For instance, 38% of ARGs in the Rhine River originate upstream, complicating regulatory oversight. Inconsistent policies across borders hinder unified responses to shared water threats (Nasser et al., 2019).

 5.6  Turning the Mirror Forward

Outdated water safety methods reflect the past, not the present. They miss antibiotic genes, chemical cocktails, and environmental triggers. As pathogens evolve and new contaminants emerge, static testing fails. It is time for real-time, predictive, and molecular monitoring to take centre stage. Only then can we ensure resilient, safe, and truly clean water for all.

To protect global water systems and public health, stakeholders must first prioritize transparency and real-time risk communication. Public dashboards displaying live microbial and chemical contamination data—such as levels of antibiotic-resistant bacteria (ARBs), endocrine disruptors, or pharmaceuticals—can empower communities with timely knowledge. This transparency builds public trust, supports evidence-based decision-making, and enables rapid response to contamination events, especially in areas where reclaimed water is widely used for agriculture or drinking.

Equally critical is the implementation of a One Health surveillance network that integrates data across human, animal, and environmental health systems. Many waterborne threats, such as antimicrobial resistance and zoonotic pathogens, originate at the intersection of these domains. By coordinating across sectors, this integrated approach enables the early detection of emerging risks and allows policymakers to address root causes of contamination—like antibiotic misuse in livestock or industrial effluent mismanagement—before they reach crisis levels.

On the technological front, stakeholders should invest in household and institutional protections, such as graphene oxide filters for homes and hospitals. These point-of-use solutions offer 99.9% filtration efficiency for contaminants like ARBs and viral particles. Meanwhile, long-term resilience depends on advancing AI-augmented biosensors and exposome-based risk models, which can forecast contamination based on environmental patterns and human exposure pathways. These innovations will redefine how we monitor and manage water safety—moving from reactive responses to proactive, precision-based protection systems.

 For Call to Action: To protect global water systems and public health, stakeholders must:

  • Public dashboards are required to show real-time microbial and chemical risks.
  • Support a One Health surveillance network integrating human, animal, and environmental data.
  • Install graphene oxide point-of-use filters at homes and hospitals.
  • Promote research into AI-augmented biosensors and exposome-based risk modeling.

Reactive water testing belongs to the past. Predictive water protection must define the future.

 

6  The Illusion of 'Safe' Reclaimed Water – Unmasking Persistent Threats

 What if the water we call "clean" is not safe at all? Beneath the polished sheen of reclaimed water lies an unseen crisis—one driven by microplastics, antibiotic resistance, and endocrine disruptors. This chapter unveils the modern challenges facing wastewater treatment, calling for a radical redefinition of safety in the 21st-century water landscape.

6.1 The Deceptive Safety of Conventional Treatment Conventional wastewater treatment removes most visible contaminants, yet microplastics and nanoplastics routinely bypass standard filters. Up to 8.3 million microplastic particles escape daily from WWTPs, contributing to ecosystem harm and food chain infiltration (Sazykin et al., 2018; Guerra et al., 2022).

Even more troubling, disinfection techniques like chlorination can convert contaminants such as BPA into more toxic chlorinated forms. Similarly, ARBs form biofilms on microplastics, increasing survival against UV by up to 300 times. These hidden transformations underscore the false sense of security surrounding treated water (Yuan et al., 2019; Nasser et al., 2019).

6.2 The Triple Threat of Emerging Contaminants

(A) Microplastics as Pathogen Ferries: Microplastics act as shuttles for ARBs and ARGs. A single 1 mm particle may carry over 4,700 ARGs and 120 pathogens. Irrigation contributes over 2.1 billion microfibers per hectare each year, reducing soil water retention by 35% and intensifying agro-environmental stress (Guerra et al., 2022; Nasser et al., 2019).

(B) Antibiotic Resistance Time Bomb: Sludge treatment often increases ARGs through gene transfer. 78% of effluents contain carbapenemase-producing Enterobacteriaceae, a critical WHO threat. Reclaimed water thus becomes a conduit for resistance that treatment fails to neutralize (Yuan et al., 2019).

(C) Endocrine Disruptor Syndemics: Phthalates in recycled water correlate with a 23% rise in autism risk. EE2 exposure at 1 ng/L causes complete gender reversal in fish. The biological impact on humans and ecosystems underscores the danger of hormonal pollutants in reclaimed water (Sazykin et al., 2018).

6.3 Technological Frontiers for Contaminant Removal

(A) Advanced Filtration Systems: Magnetic Fe₃O₄ nanotraps and enzyme-activated membranes now remove up to 98% of microplastics and 95% of nonylphenol, offering superior alternatives to outdated systems. These technologies resist biofilm formation and maintain long-term efficacy in varied environments (Sazykin et al., 2018; Nasser et al., 2019).

(B) Real-Time Monitoring Networks: CRISPR-Cas12a biosensors detect genes like blaNDM and mcr-1 in 20 minutes at 1 CFU/mL sensitivity. AI-enhanced predictive systems now track 40+ parameters, forecasting contaminant breakthroughs 72 hours ahead with high accuracy. These advances represent a paradigm shift in preemptive water management (Guerra et al., 2022; Yuan et al., 2019).

6.4 Policy Reform Imperatives

(A) Regulation and Accountability: Enforce chemical sunsetting for non-degradable polymers. California's SB 54 showed that phased compliance with polymer bans can achieve 78% reductions. Replicating such policies internationally is vital (Sazykin et al., 2018).

(B) Integrated 'One Health' Monitoring: Simultaneous testing of blood, soil, and wastewater for 150+ contaminants provides holistic surveillance. This approach strengthens ties between environmental and human health, especially in areas relying on reclaimed water (Yuan et al., 2019; Nasser et al., 2019).

(C) Public Transparency: Publishing real-time dashboards on ARB and microplastic levels builds trust. Israel's success in reducing public fear by 40% illustrates the impact of data-driven transparency on consumer confidence (Guerra et al., 2022).

6.5 Community-Centric Solutions Citizen tools like lateral flow assays now detect microplastics >500 µm with 90% accuracy, empowering farmers to manage irrigation safety. Water literacy campaigns, such as Singapore's NEWater initiative, raised reclaimed water acceptance from 32% to 78%. Urban rebates for washing machine filters, as seen in Mexico City, reduced microfiber emissions by 12 tons/year (Nasser et al., 2019; Yuan et al., 2019).

These initiatives prove that community participation and education can drive meaningful environmental change. Empowered citizens act as partners, not just beneficiaries, in sustainable water systems.

6.6  Why This Demands Immediate Action

The crisis is already here. Low-income communities using reclaimed water face 3.2 times higher phthalate exposure. Each dollar spent on better treatment saves $4.30 in healthcare and crop loss. Microplastics are accelerating methane emissions by 28%, exacerbating climate change. The stakes extend far beyond water—they implicate health, equity, and planetary stability (Guerra et al., 2022; Sazykin et al., 2018).

To address the growing risks posed by waterborne contaminants such as antibiotic-resistant bacteria (ARB), endocrine disruptors, and microplastics, governments must lead by enacting strong regulatory and research-based initiatives. A crucial action is to enforce ARB discharge limits, ideally capped at ≤100 CFU/L in treated wastewater. This regulatory threshold ensures that the most hazardous pathogens do not re-enter ecosystems or drinking water supplies. Additionally, governments must invest in decentralized R&D, supporting localized wastewater solutions, especially in rural or underserved areas. By funding modular, community-scale treatment technologies, governments can close equity gaps in water safety infrastructure.

Industries also play a pivotal role in reducing upstream contamination. A significant step involves the phasing out of polystyrene and other non-biodegradable polymers by 2030, which are key contributors to microplastic pollution. Beyond material substitution, industries must embrace green chemistry principles, redesigning products to eliminate harmful additives like phthalates or persistent organic pollutants. Green certifications and circular manufacturing standards can incentivize safer product lifecycles and reduce the burden placed on wastewater treatment plants to remove complex, toxic compounds.

Meanwhile, communities must be empowered as active stakeholders in water safety. Access to point-of-use filtration technologies, such as activated carbon or graphene oxide filters, can significantly reduce personal exposure to microplastics and chemical disruptors. These tools are particularly vital in areas lacking access to advanced treatment facilities. In parallel, residents should be encouraged to participate in quality monitoring initiatives, such as citizen science water sampling or community audits of reclaimed water sources. This participatory model builds environmental literacy, promotes data transparency, and fosters shared responsibility for clean, safe water.

Stakeholder

Critical Actions

Governments

Enforce ARB limits ≤100 CFU/L, fund decentralized R&D

Industries

Phase out polystyrene by 2030 and adopt green chemistry.

Communities

Use point-of-use filters to join quality monitoring drives.

Final Warning

 Water deemed "clean" by 20th-century standards is no longer safe. Our infrastructure and regulations lag behind today's threats. We must act—through innovation, legislation, and community action—to rebuild trust in water and to protect public and environmental health for generations to come.

 

REFERENCES

 Anderson, R., Brazelton, W., & Baross, J. (2011). Is the genetic landscape of the deep subsurface biosphere affected by viruses? Frontiers in Microbiology, 2. https://doi.org/10.3389/fmicb.2011.00219

Babajanyan, S., Garushyants, S., Wolf, Y., & Koonin, E. (2024). Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model. https://doi.org/10.1101/2024.01.17.576128

Baltrus, D., Smith, C., Derrick, M., Leligdon, C., Rosenthal, Z., Mollico, M., … & Clark, M. (2019). Genomic background governs opposing responses to nalidixic acid upon megaplasmid acquisition in pseudomonas.. https://doi.org/10.1101/832428

Baltrus, D., Smith, C., Derrick, M., Leligdon, C., Rosenthal, Z., Mollico, M., … & Clark, M. (2021). Genomic background governs opposing responses to nalidixic acid upon megaplasmid acquisition in pseudomonas. Msphere, 6(1). https://doi.org/10.1128/msphere.00008-21

BrochierArmanet, C. and Moreira, D. (2014). Horizontal gene transfer in microbial ecosystems., 445-481. https://doi.org/10.1007/978-94-017-9118-2_12

Carr, V., Shkoporov, A., Hill, C., Mullany, P., & Moyes, D. (2021). Probing the mobilome: discoveries in the dynamic microbiome. Trends in Microbiology, 29(2), 158-170. https://doi.org/10.1016/j.tim.2020.05.003

Cheng, Y., Zhou, Z., Papadopoulos, J., Zuke, J., Falbel, T., Anantharaman, K., … & Venturelli, O. (2020). Efficient plasmid transfer via natural competence in a synthetic microbial community.. https://doi.org/10.1101/2020.10.19.342733

Cooper, R., Tsimring, L., & Hasty, J. (2017). Inter-species population dynamics enhance microbial horizontal gene transfer and the spread of antibiotic resistance. Elife, 6. https://doi.org/10.7554/elife.25950

Fan, Y., Xiao, Y., Momeni, B., & Liu, Y. (2018). Horizontal gene transfer can help maintain the equilibrium of microbial communities. Journal of Theoretical Biology, 454, 53-59. https://doi.org/10.1016/j.jtbi.2018.05.036

Fang, Z. and Zhou, H. (2020). Identification of the conjugative and mobilizable plasmid fragments in the plasmidome using sequence signatures. Microbial Genomics, 6(11). https://doi.org/10.1099/mgen.0.000459

Flood, B., Bailey, J., & Biddle, J. (2014). Horizontal gene transfer and the rock record: comparative genomics of phylogenetically distant bacteria that induce wrinkle structure formation in modern sediments. Geobiology, 12(2), 119-132. https://doi.org/10.1111/gbi.12072

Franco, M., Wisecaver, J., Arnold, A., Ju, Y., Slot, J., Ahrendt, S., … & U′Ren, J. (2021). Secondary metabolism drives ecological breadth in the Xylariaceae.. https://doi.org/10.1101/2021.06.01.446356

Guo, F., Wei, W., Wang, X., Lin, H., Ding, H., Huang, J., … & Rao, N. (2012). The co-evolution of genomic islands and their bacterial hosts was revealed through phylogenetic analyses of 17 groups of homologous genomic islands. Genetics and Molecular Research, 11(4), 3735-3743. https://doi.org/10.4238/2012.october.15.5

Hackl, T., Laurenceau, R., Ankenbrand, M., Bliem, C., Cariani, Z., Thomas, E., … & Chisholm, S. (2021). Novel integrative elements and genomic plasticity in ocean ecosystems. SSRN Electronic Journal. https://doi.org/10.2139/ssrn.3817805

Haudiquet, M., Sousa, J., Touchon, M., & Rocha, E. (2022). Selfish, promiscuous and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations. Philosophical Transactions of the Royal Society B Biological Sciences, 377(1861). https://doi.org/10.1098/rstb.2021.0234

Henn, M., Sullivan, M., Stange-Thomann, N., Osburne, M., Berlin, A., Kelly, L., … & Chisholm, S. (2010). Analysis of high-throughput sequencing and annotation strategies for phage genomes. Plos One, 5(2), e9083. https://doi.org/10.1371/journal.pone.0009083

Hill, T., Unckless, R., & Perlmutter, J. (2021). Positive selection and horizontal gene transfer in the genome of a male-killing Wolbachia. Molecular Biology and Evolution, 39(1). https://doi.org/10.1093/molbev/msab303

Ishola, O., Kublik, S., Raj, A., Ohnmacht, C., Schulz, S., Foesel, B., … & Schloter, M. (2024). Comparative metagenomic analysis of bacteriophages and prophages in gnotobiotic mouse models. Microorganisms, 12(2), 255. https://doi.org/10.3390/microorganisms12020255

Jones, C., Susko, E., & Bielawski, J. (2022). Evolution of the connectivity and indispensability of a transferable gene: the simplicity hypothesis. BMC Ecology and Evolution, 22(1). https://doi.org/10.1186/s12862-022-02091-w

Juhász, J., KertészFarkas, A., Szabó, D., & Pongor, S. (2014). The emergence of collective territorial defence in bacterial communities: horizontal gene transfer can stabilize microbiomes. Plos One, 9(4), e95511. https://doi.org/10.1371/journal.pone.0095511

Kleiner, M., Bushnell, B., Sanderson, K., Hooper, L., & Duerkop, B. (2020). Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities. Microbiome, 8(1). https://doi.org/10.1186/s40168-020-00935-5

Kong, H., Kim, N., Lee, S., & Lee, S. (2016). Impact of a recombinant biocontrol bacterium, pseudomonas fluorescens pc78, on microbial community in tomato rhizosphere. The Plant Pathology Journal, 32(2), 136-144. https://doi.org/10.5423/ppj.oa.08.2015.0172

Liu, L., Chen, X., Skogerbø, G., Zhang, P., Chen, R., He, S., … & Huang, D. (2012). The human microbiome: a hot spot of microbial horizontal gene transfer. Genomics, 100(5), 265-270. https://doi.org/10.1016/j.ygeno.2012.07.012

Liu, Y., Botelho, J., & Iranzo, J. (2024). Timescale and genetic linkage explain the variable impact of defence systems on horizontal gene transfer.. https://doi.org/10.1101/2024.02.29.582795.

Molina-Pardines, C., Haro-Moreno, J., & LópezPérez, M. (2023). Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial himb59. Msystems, 8(6). https://doi.org/10.1128/msystems.00898-23

Moulana, A., Anderson, R., Fortunato, C., & Huber, J. (2020). Selection is a significant driver of gene gain and loss in the pangenome of the bacterial genus sulfurous in geographically distinct deep-sea hydrothermal vents. Msystems, 5(2). https://doi.org/10.1128/msystems.00673-19

Muniesa, M., Colomer-Lluch, M., & Jofre, J. (2013). Potential impact of environmental bacteriophages in spreading antibiotic resistance genes. Future Microbiology, 8(6), 739-751. https://doi.org/10.2217/fmb.13.32

Ni, J. (2016). Novel insight into the evolutionary process from average genome size in marine bacterioplanktonic biota. Applied Ecology and Environmental Research, 14(2), 65-75. https://doi.org/10.15666/aeer/1402_065075

Oh, S., Tandukar, M., Pavlostathis, S., Chain, P., & Konstantinidis, K. (2013). Microbial community adaptation to quaternary ammonium biocides as revealed by metagenomics. Environmental Microbiology, 15(10), 2850-2864. https://doi.org/10.1111/1462-2920.12154

Ott, L., Engelken, M., Scott, S., McNeill, E., & Mellata, M. (2021). Drosophila model for gut-mediated horizontal transfer of narrow- and broad-host-range plasmids. Msphere, 6(5). https://doi.org/10.1128/msphere.00698-21

Park, J., Muñoz, E., & Deem, M. (2010). Quasispecies theory for finite populations. Physical Review E, 81(1). https://doi.org/10.1103/physreve.81.011902

Parsons, C., Stüeken, E., Rosen, C., Mateos, K., & Anderson, R. (2020). Radiation of nitrogen-metabolizing enzymes across the tree of life tracks environmental transitions in Earth's history.. https://doi.org/10.1101/2020.05.01.064543.

Parsons, C., Stüeken, E., Rosen, C., Mateos, K., & Anderson, R. (2020). Radiation of nitrogenmetabolizing enzymes across the Tree of Life tracks environmental transitions in Earth history. Geobiology, 19(1), 18-34. https://doi.org/10.1111/gbi.12419

Pu, L. and Shamir, R. (2024). 4cac: 4-class classifier of metagenome contigs using machine learning and assembly graphs. Nucleic Acids Research, 52(19), e94-e94. https://doi.org/10.1093/nar/gkae799

Rajarapu, G. (2014). Horizontal gene transfer. Journal of Phylogenetics & Evolutionary Biology, 02(02). https://doi.org/10.4172/2329-9002.1000136

Ren, F., Sun, X., Wang, T., Yao, Y., Huang, Y., Zhang, X., … & Luan, J. (2020). Biotin provisioning by horizontally transferred genes from bacteria confers animal fitness benefits. The Isme Journal, 14(10), 2542-2553. https://doi.org/10.1038/s41396-020-0704-5

Sabatino, R., Sbaffi, T., Sivalingam, P., Corno, G., Fontaneto, D., & Cesare, A. (2023). Bacteriophages limitedly contribute to the antimicrobial resistome of microbial communities in wastewater treatment plants. Microbiology Spectrum, 11(5). https://doi.org/10.1128/spectrum.01101-23

Sengupta, S. and Azad, R. (2022). Reconstructing horizontal gene flow network to understand prokaryotic evolution. Open Biology, 12(11). https://doi.org/10.1098/rsob.220169

Sengupta, S. and Azad, R. (2023). Leveraging comparative genomics to uncover alien genes in bacterial genomes. Microbial Genomics, 9(1). https://doi.org/10.1099/mgen.0.000939

Sezmis, A., Woods, L., Peleg, A., & McDonald, M. (2023). Horizontal gene transfer, fitness costs and mobility shape the spread of antibiotic resistance genes into experimental populations of acinetobacter baylyi. Molecular Biology and Evolution, 40(3). https://doi.org/10.1093/molbev/msad028

Shah, Y. and Kafaie, S. (2024). Evaluating sequence alignment tools for antimicrobial resistance gene detection in assembly graphs. Microorganisms, 12(11), 2168. https://doi.org/10.3390/microorganisms12112168

Shalon, N., Relman, D., & Yaffe, E. (2022). Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors. Genome Research, 32(5), 986-1003. https://doi.org/10.1101/gr.275894.121

Sheinman, M., Arkhipova, K., Arndt, P., Dutilh, B., Hermsen, R., & Massip, F. (2020). Long identical sequences found in multiple bacterial genomes reveal a frequent and widespread exchange of genetic material between distant species.. https://doi.org/10.1101/2020.06.09.139501.

Shi, X., Lin, Y., Qiu, Y., Li, Y., Jiang, M., Chen, Q., … & Huang, S. (2016). Comparative screening of digestion tract toxic genes in proteus mirabilis. Plos One, 11(3), e0151873. https://doi.org/10.1371/journal.pone.0151873

Song, L., Wang, X., Zhang, W., Ye, L., & Feng, X. (2018). Low-intensity ultrasound promotes the horizontal transfer of resistance genes mediated by plasmids in E. coli. 3 Biotech, 8(5). https://doi.org/10.1007/s13205-018-1247-6

Song, W., Steensen, K., & Thomas, T. (2017). Hgtsim: a simulator for horizontal gene transfer (HGT) in microbial communities. Peerj, 5, e4015. https://doi.org/10.7717/peerj.4015

Song, W., Steensen, K., & Thomas, T. (2017). Peer review #1 of "him: a simulator for horizontal gene transfer (HGT) in microbial communities (v0.2)".. https://doi.org/10.7287/peerj.4015v0.2/reviews/1

Sysoeva, T., Kim, Y., Rodríguez, J., Lopatkin, A., & You, L. (2019). Growthstagedependent regulation of conjugation. Aiche Journal, 66(3). https://doi.org/10.1002/aic.16848

Tuller, T., Girshovich, Y., Sella, Y., Kreimer, A., Freilich, S., Kupiec, M., … & Ruppin, E. (2011). Association between translation efficiency and horizontal gene transfer within microbial communities. Nucleic Acids Research, 39(11), 4743-4755. https://doi.org/10.1093/nar/gkr054

Tuttle, M., May, F., Basso, J., Gann, E., Xu, J., & Buchan, A. (2022). Plasmid-mediated stabilization of prophages. Msphere, 7(2). https://doi.org/10.1128/msphere.00930-21

Wang, T., Weiss, A., Ha, Y., & You, L. (2021). Predicting plasmid persistence in microbial communities by coarsegrained modelling. Bioessays, 43(9). https://doi.org/10.1002/bies.202100084

Watts, J., Schreier, H., Lanska, L., & Hale, M. (2017). The rising tide of antimicrobial resistance in aquaculture: sources, sinks and solutions. Marine Drugs, 15(6), 158. https://doi.org/10.3390/md15060158

Wu, J., Xiao, Y., Zhao, L., Li, Z., Zhao, G., & Zhang, L. (2025). Systematic characterization of horizontally transferred biosynthetic gene clusters in the human gut microbiota using htbgcfinder. iMetaOmics, 2(1). https://doi.org/10.1002/imo2.62

Xiang, X., Li, Y., Ye, J., Li, B., He, G., Zhu, M., … & Yang, Y. (2024). Exploring the microbiome of fermented soy products: implications for gut health in China.. https://doi.org/10.21203/rs.3.rs-4982604/v1

Zhang, W., Ding, W., Yang, B., Tian, R., Gu, S., Luo, H., … & Qian, P. (2016). Genomic and transcriptomic evidence for carbohydrate consumption among microorganisms in a cold seep brine pool. Frontiers in Microbiology, 7. https://doi.org/10.3389/fmicb.2016.01825

Zhao, S., Rogers, M., Ding, C., Xu, G., & He, J. (2024). Interspecies mobility of organohalide respiration gene clusters enables genetic bioaugmentation. Environmental Science & Technology. https://doi.org/10.1021/acs.est.3c09171

 

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